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1.0.7

Type Download Link
Windows installer phaedra_1.0.7_setup.exe (sha256, md5)
Debian/Ubuntu package installer phaedra_1.0.7_amd64.deb (sha256, md5)
RPM Redhat/Centos7 package installer phaedra_1.0.7_x86_64.rpm (sha256, md5)
Mac OSX installer phaedra_1.0.7.dmg (sha256, md5)
Type Download Link
Windows portable installation phaedra_1.0.7_win.zip

Note: portable installations can be unzipped directly to any location on your computer. No installation procedure is involved.

Type Download Link
Windows DataCapture server dcserver_1.0.7_win.zip
Linux DataCapture server dcserver_1.0.7_linux.zip

Note: for more information about the Data Capture server, see Addon: Data Capture Server.

Changelog

New:

  • Added an outlier detection mechanism
  • Added a hit calling mechanism
  • Added a new model to define reusable calculation formulae
  • Added a new model for defining cross-protocol projects
  • Added an export wizard for exporting lists of plates
  • Added new normalization methods: PIN (%INH), Z-Score, Robust Z-Score
  • Added new plate statistic: Robust Z-Prime
  • Added new multiplo method: AllPlates
  • Added new 'Export Info' table to all export types and formats
  • Added support for configuring concentration unit application-wide.
  • Added support for OIDC authentication
  • Added support for storing subwelldata in an Oracle DB
  • DataCapture: added support for per-server jobs and logging
  • DataCapture: added support for auto-rejecting empty wells during import
  • DataCapture: added new module to merge image planes (MIP).
  • DataCapture: added new scanjob type for AWS: SQSscanner
  • DataCapture: added post-capture hooks for additional script execution

Improved:

  • Optimized querying in the UI, including user preferences, to reduce UI blocking
  • Optimized parallel persisting of the datacapture reading store, to improve import speed
  • Optimized jp2k codestream buffering and loading
  • Improved exception handling in render jobs to simplify debugging and avoid thread death
  • Added new settings to control JPA caching behaviour for servers
  • Improved filename proposals for export files
  • Display compound properties, if any, in the DRC view
  • Added option to customize the property table in the DRC view
  • Added support for custom pICx values for OSB curves
  • Added 'eMin' property to OSB curve fit model
  • Added settings to ProtocolClass to select a default multiplo method and parameter, automatically applied to new experiments
  • Added support for configuring specific roles required for operations in the environment config
  • Added support for non-local domain in windows authentication handler
  • Added display of normalization formula in the ProtocolClass Editor and Feature Selector
  • Added support for custom parameters in JEP formulae

Bugfixes:

  • Fixed: thread access issue in heatmap thumbnail renderer
  • Fixed: sn and sb were swapped in exports
  • Fixed: stackoverflow error when resizing the feature heatmaps table
  • Fixed: cloned plates had incorrect caching of raw values
  • Fixed: well data export error if only key/basic curve properties are selected (SQLException "PIC50_CENSOR" not found)
  • Fixed: error on downloading 'empty folders' from s3
  • Fixed: issue with plate remarks overwriting plate description
  • Fixed: cleanup of temp files during datacapture
  • Fixed: caching issue with concurrent welldata pre-loading
  • Fixed: issues with multiplo curvefitting
  • Fixed: update of CrcDetailsView after changing user preferences
  • Fixed: modification of cached CurveFitSettings
  • Fixed: widget dispose exception in FeatureInspector
  • Fixed: cancel on table disposed in CompoundImageContentProvider
  • Fixed: handling of selections with multiplo compounds or its curves in Compound Browser
  • Fixed: out-of-memory when copying a large file (datacapture / cloning plates)
  • Fixed: NPE when create protocol class (from protocol class list)
  • Fixed: SecurityService.checkPersonalObject for AccessScope.TEAM
  • Fixed: layout in file selection/include page of export wizards
  • Fixed: Compound Browser now displays multiple barcodes in case of multiplo compounds
  • Fixed: concurrency in ExperimentInspector
  • Fixed: initial bootstrap setup of phaedra.hca_plate_template table for h2
  • Fixed: NPE when saving preferences if no columbus is set as default
  • Fixed: incorrect cache checks on expired elements

1.0.6

Type Download Link
Windows installer phaedra_1.0.6_setup.exe (sha256, md5)
Debian/Ubuntu package installer phaedra_1.0.6_amd64.deb (sha256, md5)
RPM Redhat/Centos7 package installer phaedra_1.0.6_x86_64.rpm (sha256, md5)
Mac OSX installer phaedra_1.0.6.dmg (sha256, md5)
Type Download Link
Windows portable installation phaedra_1.0.6_win.zip

Note: portable installations can be unzipped directly to any location on your computer. No installation procedure is involved.

Type Download Link
Windows DataCapture server dcserver_1.0.6_win.zip
Linux DataCapture server dcserver_1.0.6_linux.zip

Note: for more information about the Data Capture server, see Addon: Data Capture Server.

Changelog

  • New backend for plate templates: db instead of fs
  • New: support R as a script engine
  • New: allow dcserver to authenticate using a pwd-id instead of password
  • Fixed: flickering in JP2K canvas renderer
  • Fixed: JP2K canvas renderer: inefficient grid calculation on big images
  • Fixed: subwell silo: error when adding feature column that has no data
  • Fixed: import fails on null arrays of subwell data
  • Fixed: incorrect column size in some tables
  • Fixed: ROI editor state is cleared when a save fails
  • Fixed: hca_subwelldata is very slow in postgres
  • Fixed: subwelldata montage can fail on a well if a field has no data
  • Fixed: subwelldata writer node query efficiency
  • Fixed: plate link dialog: settings for plates are overwritten
  • Fixed: welldata export: poor performance on postgres
  • Fixed: welldata export: REMARK column is empty

1.0.5

Changelog

  • New: Saved Perspectives, allowing to save and load stateful views and perspectives
  • Added support for datacapture from SQLite files
  • Added support for numeric plate properties in datacapture
  • Added new authentication method: Windows logon
  • Improved startup performance by reducing nr of queries executed
  • Optimized loading times when opening silos
  • Improved the error message when opening a plate with no features
  • Fixed: shared silos are not shown
  • Fixed: uploads of >5GB fail in an S3-backend
  • Fixed: errors when importing incomplete/absent subwelldata in DB-backend
  • Fixed: S3-backend will now use SSE (encryption) when needed
  • Fixed: error in plate grids when tooltips are missing
  • Fixed: bypass cache when doing image renders with custom settings
  • Fixed: ScanJob configuration stored in DB with incorrect datatype
  • Fixed: headers in welldata exports are always uppercase, regardless of DB type

1.0.4

Changelog

  • Added option for users to share saved views with each other
  • Added option to export all curve fit properties instead of just key properties
  • Added a toggle to enable smb2 support
  • Added option to enable SSE in S3 transfers
  • Implemented a new incremental-rendering method for the image canvas
  • Added a new database backend for storing subwelldata
  • Added support for multi-plate updates in the HDF5 subwelldata backend
  • Improved montage layout: allow 'holes' in layouts (e.g. in literal layouts)
  • Protocol class editor: made the 'default feature' list sorted and searchable
  • Silos are now stored in the database rather than a HDF5 file
  • Fixed image thumbnails having incorrect size in well table view
  • Fixed broken context help links
  • Fixed ImageRenderService#getWellImageSize returning incorrect size
  • Fixed issue with s3 dir() returning the directory name itself
  • Fixed silo dataset resizing issues
  • Fixed issues with saving new columns and removing columns in silos
  • Fixed issue with ROI editor generating an incorrect label image

1.0.3

Changelog

  • New plate browser column: %CV
  • New option: auto-define new well types from plate layout templates
  • New plate grid layer: Scripted Chart
  • Improved protocol-class editor: curve fit models now have a description field explaining their use
  • Improved data-capture performance: you can now capture images of many formats without needing a conversion step
  • Improved image rendering performance, using multithreading and decoder pooling
  • Scripted Charts can now be added to PDF reports
  • Infrastructure: PWD store now supports HTTP paths as well as file paths
  • Infrastructure: support added for SMBv2 file shares
  • Fixed: missing labels on plate heatmaps in PDF reports
  • Fixed: plate layouts not getting captured properly during data-capture
  • Fixed: plate layout annotations saving their label instead of their value
  • Fixed: incorrect eMax sorting and exporting in the Compound Browser
  • Fixed: Zoom-To-Fit action not working correctly in the Well Image view
  • Fixed: vague exception when data-capture fails on a required folder that is missing
  • Fixed: exception when logging into an SMB session without a domain name
  • Fixed: typo in the data-capture common function 'readFile'
  • Fixed: dash character is not properly escaped in data-capture pattern variables
  • Fixed: issue with exporting feature values from a query table

1.0.2

Changelog

  • Added support for non-HDF5 subwelldata backends
  • Added support for S3-compatible image stores
  • New R version: 3.4.3
  • The TCP ports for R nodes are now configurable
  • Improved scripting documentation and tutorials
  • Improved image rendering performance
  • Compound browser: added a column containing the image of the max effect well
  • Fixed: text overlap on the Linux splash screen
  • Fixed: subwell chart layers on plates were not responding
  • Fixed: invalid curve settings remain after changing curve settings to PLOT_ONLY

1.0.1

Changelog

  • Support for Linux platforms
  • Support for MacOS platform
  • Initial release of Phaedra addons: Reporting, Workflows, Python, DCServer
  • New CellProfiler import wizard
  • Fix: issue with rendering of PDF reports

1.0.0

Changelog

  • Initial open-source release